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GrainGenes Marker Report: Hor2

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Locus	Hor2
Type	CAPS Gene RFLP STS
Synonym	Synonym Sex76 (Hordeum)
Chromosome	1H
Chromosome Arm	1HS
Map	[ Hide all but 1 of 23 ] Barley-Consensus-1H -34.2 Barley-Consensus2-1H 25.5 Hordeum-Bins-1H 9.8 Hordeum-Consensus2005-SNP-1H 14.76 Hordeum-CxB-1H 17.4 Hordeum-Genes-1H 68.7 Hordeum-Genes2-1H 77 Hordeum-Giese1-1H 0 Hordeum-Giese2-1H 0 Hordeum-Graner2-1H 0 Hordeum-IxT/Q-1H -52.4 Hordeum-LxV-1H 3.6 Hordeum-NABGMP1-1H 2.8 Hordeum-Physical-RFLP-1H 0 Hordeum-QTLConsensus-Abiotic-1H 14.76 Hordeum-QTLConsensus-Agronomic-1H 14.76 Hordeum-StMo-SNP-1H 20.6 Hordeum-SxM-FeedQTL-1H 2.8 Hordeum-Wise-1H 8.1 Hv-Consensus2006-Marcel-1H 11.73 Hv-Integrated2009-1H 13.8 Hv-L94/Vada-2006-1H 4 Hv-Nure/Tremois-1H 0.8
	[ Show Nearby Loci ]
QTL with Locus Marker	QAa.HaTR-1H.1 [ Show all 13 ]
Map Data	Barley consensus [ Show all 23 ]
2 Point Data	Hor2/Xris14 Distance: 13 cM
Species	Hordeum vulgare
Probe	Hor2 KV1/KV9 pB11
Associated Gene	Hor2 (Hordeum) Sex76 (Hordeum)
Candidate Gene	Hor2 (Hordeum)
Gene Class	B-Hordein beta-Hordein Hordeins
Reference	Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Netsvetaev VP (1997) High lysine mutant of winter barley - L76 Barley Genetics Newsletter 27:51. Kleinhofs A et al. (1993) A molecular, isozyme and morphological map of the barley (Hordeum vulgare) genome Theoretical and Applied Genetics 86:705-712.
Data Source	Blake, Tom 05.04.19
Remark	The Hor2 RFLP/STS is a gene marker for the Sex76 gene. Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = L9Oregon Wolfe Barleys x Vada,Steptoe x Morex,Igri x Franka,Nure x Tremois Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : L94 x Vada; Oregon Wolfe Dom x Rec; Steptoe x Morex; Igri x Franka
Possible Orthologs	HOR-2
Probe for Locus	KV1/KV9
Locus	Hor2 kv1.9A kv1.9B kv1.9C
Reference	Portyanko VA et al. (2001) A linkage map of hexaploid oat based on grass anchor DNA clones and its relationship to other oat maps Genome 44:249-265.
Type	PCR STS
PCR primers	KV1 : 5' CCACCATGAAGACCTTCCTC KV9 : 5' TCGCAGGATCCTGTACAACG
Sequence	X03103
Source Gene Class	B-Hordein
Source Gene	Hor2 (Hordeum)
Source Species	Hordeum vulgare