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GrainGenes Marker Report: EBmac0806

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Locus	EBmac0806
Type	Microsatellite
Synonym	Synonym EBmac806
Chromosome	6H
Map	Barley, B73xCPI-6H 54.6 [ Show all 11 ]
	[ Show Nearby Loci ]
Map Data	[ Hide all but 1 of 11 ] Barley, Abiotic QTL Consensus Barley, Agronomic QTL Consensus Barley, B73xCPI Barley, Consensus 2005, SNP Barley, Consensus 2006, Marcel Barley, Consensus 2007, SSR Barley, Consensus 2023, FHB Barley, Integrated, Marcel 2009 Barley, L94 x Vada, 2006 Barley, Lina x H.spont, SNP Barley, LxHs
Species	Hordeum spontaneum Hordeum vulgare
Probe	EBmac0806 EBmac806
Reference	Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Ramsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
Remark	Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' [ Show all 7 ]
Possible Orthologs	EBmac806
Probe for Locus	EBmac806
Locus	EBmac0806 EBmac806
Synonym	Other name Bmac806 EBmac0806
Reference	Ramsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
General Remarks	Insert contains repeat (CA)4GA(CA)8,(CA)5 Quality = 1: Single product, only weak stutter bands Diversity Index (DI) = 0.78
Type	PCR SSR
PCR primers	5' ACTAAGTCCTTTCACGAGGA 3' 5' GTGTGTAGTAGGTGGGTACTTG 3'
SSR size	168
Amplification Conditions	1 cycle of 1 min @ 94C, 1 min @ 55C, 1 min @ 72C, 30 cycles of 1 min @ 94C, 1 min @ 55C, 1 min @ 72C, 1 cycle of 5 mins @ 72C.
Source Species	Hordeum vulgare