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GrainGenes Marker Report: EBmac0415

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Locus	EBmac0415
Type	Microsatellite
Synonym	Synonym EBmac415
Chromosome	2H
Map	[ Hide all but 1 of 19 ] Barley, B73xCPI-2H 132.3 Barley-ConsensusFHB-2H 111.03 Hordeum-Consensus2005-SNP-2H 130.468 Hordeum-Consensus2007-SSR-2H 117.86 Hordeum-FxS-FHB-QTL-2H 175.1 Hordeum-LiHs-SNP-2H 67.27 Hordeum-Lx41-2H 222.8 Hordeum-LxHs-2H 105 Hordeum-OWB-2004-2H 139.3 Hordeum-OWB-2005-2H 137.4 Hordeum-OWB-2H 137.8 Hordeum-OWB-SNP-2H 146.26 Hordeum-Pillen-2H 105 Hordeum-QTLConsensus-Abiotic-2H 130.47 Hordeum-QTLConsensus-Agronomic-2H 130.47 Hv-Consensus2006-Marcel-2H 117.86 Hv-Integrated2009-2H 114.9 Hv-Nure/Tremois-2H 134.7 Hv-Vada/SusPtrit-2H 96.45
	[ Show Nearby Loci ]
QTL with Locus Marker	MetaQ.FHB_2H_40 MetaQ.HD_2H_23 QFhs.umn-2H.6 QHD.umn-2H.2 QYld.pil-2H.2
Map Data	Barley, Abiotic QTL Consensus [ Show all 19 ]
Species	Hordeum spontaneum Hordeum vulgare
Probe	EBmac0415 EBmac415
Reference	Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Mesfin A et al. (2003) Quantitative trait loci for fusarium head blight resistance in barley detected in a two-rowed by six-rowed population Crop Science 43:307-318. Ramsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
Remark	Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' [ Show all 7 ]
Possible Orthologs	Bmac0415 EBmac415
Probe for Locus	EBmac415
Locus	EBmac0415 EBmac415
Synonym	Other name Bmac415 EBmac0415
Reference	Ramsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
General Remarks	Insert contains repeat (AC)17 Quality = 2: Single product, relatively strong stutter bands Diversity Index (DI) = 0.58
Type	PCR SSR
PCR primers	5' GAAACCCATCATAGCAGC 3' 5' AAACAGCAGCAAGAGGAG 3'
SSR size	247
Amplification Conditions	1 cycle of 1 min @ 94C, 1 min @ 55C, 1 min @ 72C, 30 cycles of 1 min @ 94C, 1 min @ 55C, 1 min @ 72C, 1 cycle of 5 mins @ 72C.
Source Species	Hordeum vulgare