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GrainGenes Marker Report: CDO504

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Locus	CDO504
Type	RFLP
Synonym	Other name cdo504 Synonym CDO504
Chromosome	5H
Chromosome Arm	5HL
Map	Barley-consensus-2003-5H 30.4 [ Show all 28 ]
	[ Show Nearby Loci ]
QTL with Locus Marker	QBgnm.HaTR-5H.1 QEv.HaTR-5H QHt.BlE2-5H QSss.HaTR-5H.1
Map Data	[ Hide all but 1 of 26 ] Barley consensus Barley consensus 2 Barley consensus 2003 Barley, Abiotic QTL Consensus Barley, Agronomic QTL Consensus Barley, BinMap 2005 Barley, Consensus 2005, SNP Barley, Consensus 2006, DArT Barley, Consensus 2006, Marcel Barley, Consensus 2023, FHB Barley, GxH Barley, HxT basemap Barley, Integrated, Marcel 2009 Barley, Steptoe x Morex, SNP Barley, Steptoe x Morex, SSAP Barley, SxM Barley, SxM basemap Barley, SxM, Feed QTLs Barley, VGxTP Barley, Zhedar2, FHB QTL Leymus_2012_TTC1 Leymus_2012_TTC2 Leymus_2012_TTCC Oat, OxT Oat-2016-Consensus Oat-2018-Consensus
Species	Avena sativa
Probe	CDO504
Homology	AAF71315.1 e-value: 4e-32 (AF241512) unknown [Agropyron cristatum]
Reference	Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source	Blake, Tom 05.04.19 Langridge, Peter J.
Remark	Number of populations contributing to the placement of CDO504 in the Barley, Consensus 2006 DArT maps = 1 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Possible Orthologs	Xcdo504 [ Show all 7 ]
Probe	CDO504
Locus	CDO504 [ Show all 8 ]
Synonym	Synonym HAR35_17977
Reference	Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks	Uni-ZAP XR library OatUni-ZAPXR [c] OatUni-ZAPXR
Type	cDNA
Sequence	BE439141 CDO504_WHE2E0121 CDO504_WHE2E0122 CDO504-5
Polymorphism	CDO504 EcoRI CDO504 EcoRV CDO504 HindIII CDO504 DraI CDO504 XbaI
Linkage Group	[b 7L]
Insert Enzyme	EcoRI XhoI
Source Species	Avena sativa
Source Germplasm	Brooks (oat)
Source Tissue	etiolated leaf
Insert Size	0.8
PCR size	0.8