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GrainGenes Marker Report: CDO504

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Locus	CDO504
Type	RFLP
Synonym	Other name cdo504 Synonym CDO504
Chromosome	5H
Chromosome Arm	5HL
Map	[ Hide all but 1 of 28 ] Barley-consensus-2003-5H 30.4 Barley-Consensus-5H 67.7 Barley-Consensus2-5H 139.4 Barley-ConsensusFHB-5H 137.4 Hordeum-Bins-5H 138.3 Hordeum-Consensus2005-SNP-5H 137.721 Hordeum-Consensus2006-DArT-5H 132.1 Hordeum-Giese2-5H 110 Hordeum-GxH-5H 218.22 Hordeum-HxT-base-5H 161.4 Hordeum-NABGMP1-5H 145.3 Hordeum-QTLConsensus-Abiotic-5H 137.72 Hordeum-QTLConsensus-Agronomic-5H 137.72 Hordeum-StMo-SNP-5H 128.29 Hordeum-SxM-base-5H 144.2 Hordeum-SxM-FeedQTL-5H 145.3 Hordeum-SxM-SSAP-5H 132.7 Hordeum-Zhedar2-FHB-QTL-5H 125.9 Hv-Consensus2006-Marcel-5H 121.33 Hv-Integrated2009-5H 120.3 Leymus_2012_con_LG5Ns 143.439 Leymus_2012_con_LG5Xm 107.001 Leymus_2012_TTC1_LG5Xm 90.432 Leymus_2012_TTC2_LG5Ns 147.959 Leymus_2012_TTC2_LG5Xm 113.998 Oat-2016-Consensus-20 135.8 Oat-2018-Consensus_Mrg20 135.8 Oat-OxT-1 28.5
	[ Show Nearby Loci ]
QTL with Locus Marker	QBgnm.HaTR-5H.1 QEv.HaTR-5H QHt.BlE2-5H QSss.HaTR-5H.1
Map Data	Barley consensus [ Show all 26 ]
Species	Avena sativa
Probe	CDO504
Homology	AAF71315.1 e-value: 4e-32 (AF241512) unknown [Agropyron cristatum]
Reference	Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source	Blake, Tom 05.04.19 Langridge, Peter J.
Remark	Number of populations contributing to the placement of CDO504 in the Barley, Consensus 2006 DArT maps = 1 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Possible Orthologs	Xcdo504 [ Show all 7 ]
Probe	CDO504
Locus	CDO504 [ Show all 8 ]
Synonym	Synonym HAR35_17977
Reference	Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks	Uni-ZAP XR library OatUni-ZAPXR [c] OatUni-ZAPXR
Type	cDNA
Sequence	BE439141 CDO504_WHE2E0121 CDO504_WHE2E0122 CDO504-5
Polymorphism	CDO504 EcoRI CDO504 EcoRV CDO504 HindIII CDO504 DraI CDO504 XbaI
Linkage Group	[b 7L]
Insert Enzyme	EcoRI XhoI
Source Species	Avena sativa
Source Germplasm	Brooks (oat)
Source Tissue	etiolated leaf
Insert Size	0.8
PCR size	0.8