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GrainGenes Marker Report: CDO36

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Locus	CDO36
Type	RFLP
Chromosome	2H
Map	Barley-consensus-2003-2H 151.4 [ Show all 7 ]
	[ Show Nearby Loci ]
QTL with Locus Marker	QPm.PrNu-7H
Map Data	Barley consensus 2 [ Show all 7 ]
Probe	CDO36
Reference	Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source	Langridge, Peter J.
Remark	Number of populations contributing to the placement of CDO36 in the Barley, Consensus 2006 DArT maps = 1
Possible Orthologs	[ Hide all but 1 of 22 ] CDO036 CDO036A cdo36a CDO036B CDO36b Xcdo36 Xcdo36-2 Xcdo36-2A Xcdo36-2A.1 Xcdo36-2A.2 Xcdo36-2B Xcdo36-2B.1 Xcdo36-2B.2 Xcdo36-2D Xcdo36-4B Xcdo36A Xcdo36B Xcdo36x Xcnl.CDO36 CDO36B CDO36A cdo36
Probe	CDO36
Locus	CDO36b [ Show all 23 ]
Synonym	Synonym HAR35_21104 HAR35_6860
Reference	Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks	Uni-ZAP XR library OatUni-ZAPXR [c] OatUni-ZAPXR
Type	cDNA STS
PCR primers	TCAAGCGAACCATCAGCGT AGCCCTCGCCTAGCTCAG
Sequence	AA231751 AA231907 CDO36-5
Polymorphism	CDO36 EcoRI
Linkage Group	[b 1S]
Insert Enzyme	EcoRI XhoI
Source Species	Avena sativa
Source Germplasm	Brooks (oat)
Source Tissue	etiolated leaf
Insert Size	1.1
PCR size	1.1