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GrainGenes Marker Report: CDO348B

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Locus	CDO348B
Type	RFLP
Synonym	Synonym CDO348
Chromosome	5H
Map	Barley-Consensus2-5H 66.9 [ Show all 16 ]
	[ Show Nearby Loci ]
QTL with Locus Marker	QDrm.StMo-5H.1
Map Data	[ Hide all but 1 of 16 ] Barley consensus 2 Barley, Abiotic QTL Consensus Barley, Agronomic QTL Consensus Barley, BinMap 2005 Barley, Consensus 2005, SNP Barley, Consensus 2006, Marcel Barley, HxT basemap Barley, Integrated, Marcel 2009 Barley, Steptoe x Morex, SNP Barley, SxM Barley, SxM, Feed QTLs Oat, KxO, 2003 Oat-2009-KxO Oat-2016-Consensus Oat-2016-KxO Oat-2018-Consensus
Species	Avena sativa
Probe	CDO348
Homology	BAB32971.1 e-value: 2e-26 (AP002970) contains ESTs C26515(C12513),AU081503(C12513)~similar to Arabidopsis thaliana chromosome 3 MDB19.11~unknown protein [Oryza sativa]
Reference	Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source	Blake, Tom 05.04.19
Remark	Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex Marker placement value = 4.64 cM on map Oat-KxO/2003-7_10_28 Marker is not a framework marker on map Oat-KxO/2003-7_10_28
Possible Orthologs	CDO348 [ Show all 10 ]
Probe for Locus	CDO348
Locus	CDO348 [ Show all 11 ]
Synonym	Synonym HAR35_1722 HAR35_1724
Reference	Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
General Remarks	Uni-ZAP XR library OatUni-ZAPXR [c]
Type	cDNA
Sequence	BE439086 CDO348_WHE2E0031 CDO348_WHE2E0032 CDO348-5 CDO348-3
Polymorphism	CDO348 EcoRI CDO348 EcoRV CDO348 DraI
Linkage Group	[b 1S]
Insert Enzyme	EcoRI XhoI
Source Species	Avena sativa
Source Germplasm	Brooks (oat)
Source Tissue	etiolated leaf
Insert Size	1.4
PCR size	1.4