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GrainGenes Marker Report: CDO345

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Locus	CDO345
Type	RFLP
Synonym	Synonym CDO345
Chromosome	3H
Map	Barley-ConsensusFHB-3H 92.89 [ Show all 12 ]
	[ Show Nearby Loci ]
Map Data	[ Hide all but 1 of 12 ] Barley, Abiotic QTL Consensus Barley, Agronomic QTL Consensus Barley, BinMap 2005 Barley, Consensus 2005, SNP Barley, Consensus 2006, DArT Barley, Consensus 2023, FHB Barley, FxS, FHB QTL Barley, Integrated, Marcel 2009 Barley, OPA 2009, Consensus Barley, Pilot OPA1, Consensus Barley, Steptoe x Morex, SNP Rice, BxOl
Probe	CDO345
Homology	A83370 e-value: 2.1 probable MFS transporter PA2210 [imported] - Pseudomonas aeruginosa (strain PAO1) A83370 e-value: 2.4 probable MFS transporter PA2210 [imported] - Pseudomonas aeruginosa (strain PAO1)
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Mesfin A et al. (2003) Quantitative trait loci for fusarium head blight resistance in barley detected in a two-rowed by six-rowed population Crop Science 43:307-318.
Data Source	Close, Timothy J.
Remark	Number of populations contributing to the placement of CDO345 in the Barley, Consensus 2006 DArT maps = 1 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex
Possible Orthologs	Xcdo345 Xcdo345d
Probe	CDO345
Locus	CDO345 Xcdo345 Xcdo345d
Reference	Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks	Uni-ZAP XR library
Type	cDNA
Sequence	BE439084 [ Show all 8 ]
Source Species	Avena sativa
Source Germplasm	Brooks (oat)
Source Tissue	etiolated leaf
PCR size	1.5