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GrainGenes Marker Report: CDO122

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Locus	cdo122
Type	RFLP
Synonym	Synonym cdo122
Chromosome	4H
Map	Hordeum-Bins-4H 31 [ Show all 20 ]
	[ Show Nearby Loci ]
QTL with Locus Marker	QHD.OxM-QTL1_7 QHT.OxM-QTL1_7.2 QPHOTO.2002-OxT_31
Map Data	[ Hide all but 1 of 20 ] Barley, Abiotic QTL Consensus Barley, Agronomic QTL Consensus Barley, BinMap 2005 Barley, Consensus 2005, SNP Barley, Consensus 2006, Marcel Barley, Integrated, Marcel 2009 Barley, OWB Barley, OWB, 2004 Barley, OWB, 2005 Barley, OWB, OPA2008 Barley, OWB, SNP Barley, Steptoe x Morex, SNP Oat, KxO, 2003 Oat, OxT Oat-2002-OxT-QTL Oat-2003-OglexMAM17-5 Oat-2003-OxM-QTL1 Oat-2003-OxM-QTL3 Oat-2004-OxM-QTL4 Rice, BxOl
Species	Hordeum vulgare
Probe	CDO122
Homology	AF076691_1 e-value: 8.5 (AF076691) aureobasidin-resistance protein; AurA [Aspergillus nidulans] AAF51683.1 e-value: 9.4 (AE003593) CG10523 gene product [Drosophila melanogaster]
Reference	Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Remark	Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Oregon Wolfe Barleys Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Oregon Wolfe Dom x Rec Marker placement value = 2.38 cM on map Oat-KxO/2003-7_10_28 Marker is not a framework marker on map Oat-KxO/2003-7_10_28
Possible Orthologs	CDO122a CDO122b Xcdo122 CDO122
Probe	CDO122
Locus	Xcdo122 [ Show all 8 ]
Reference	Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks	Uni-ZAP XR library
Type	cDNA
Sequence	BE439056 [ Show all 6 ]
Polymorphism	CDO122 EcoRI
Source Species	Avena sativa
Source Germplasm	Brooks (oat)
Source Tissue	etiolated leaf
PCR size	1.2