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GrainGenes Marker Report: CDO122

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Locus	cdo122
Type	RFLP
Synonym	Synonym cdo122
Chromosome	4H
Map	[ Hide all but 1 of 20 ] Hordeum-Bins-4H 31 Hordeum-Consensus2005-SNP-4H 29.761 Hordeum-OWB-2004-4H 29.8 Hordeum-OWB-2005-4H 30.7 Hordeum-OWB-4H 32.3 Hordeum-OWB-OPA2008-4H 33.544 Hordeum-OWB-SNP-4H 32.45 Hordeum-QTLConsensus-Abiotic-4H 29.76 Hordeum-QTLConsensus-Agronomic-4H 29.76 Hordeum-StMo-SNP-4H 30.78 Hv-Consensus2006-Marcel-4H 32.7 Hv-Integrated2009-4H 43.4 Oat-2002-OxT-QTL_31 105 Oat-2003-OglexMAM17-5_7 51 Oat-2003-OxM-QTL1_7 52.8 Oat-2003-OxM-QTL3_7 52.8 Oat-2004-OxM-QTL4_7 52.8 Oat-KxO/2003-7_10_28 130 Oat-OxT-31 108.5 Rice-CU-3 113.4
	[ Show Nearby Loci ]
QTL with Locus Marker	QHD.OxM-QTL1_7 QHT.OxM-QTL1_7.2 QPHOTO.2002-OxT_31
Map Data	Barley, Abiotic QTL Consensus [ Show all 20 ]
Species	Hordeum vulgare
Probe	CDO122
Homology	AF076691_1 e-value: 8.5 (AF076691) aureobasidin-resistance protein; AurA [Aspergillus nidulans] AAF51683.1 e-value: 9.4 (AE003593) CG10523 gene product [Drosophila melanogaster]
Reference	Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Remark	Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Oregon Wolfe Barleys Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Oregon Wolfe Dom x Rec Marker placement value = 2.38 cM on map Oat-KxO/2003-7_10_28 Marker is not a framework marker on map Oat-KxO/2003-7_10_28
Possible Orthologs	CDO122a CDO122b Xcdo122 CDO122
Probe	CDO122
Locus	Xcdo122 [ Show all 8 ]
Reference	Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks	Uni-ZAP XR library
Type	cDNA
Sequence	BE439056 [ Show all 6 ]
Polymorphism	CDO122 EcoRI
Source Species	Avena sativa
Source Germplasm	Brooks (oat)
Source Tissue	etiolated leaf
PCR size	1.2