GrainGenes Marker Report: CDO099
Locus
CDO099
Type
RFLP
Synonym
Synonym CDO99
Chromosome
1H
Map
Hordeum-Bins-1H 39.7
[ Show all 7 ]
[ Show Nearby Loci ]
Map Data
Barley, Abiotic QTL Consensus
[ Show all 7 ]
Probe
CDO99
Homology
BAB01753.1 e-value: 0.46 (AP000603) gb|AAD10646.1~gene_id:MRP15.12~strong similarity to unknown protein [Arabidopsis thaliana]
Reference
Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Remark
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Possible Orthologs
CDO99
[ Show all 11 ]
Probe for Locus
CDO99
Locus
CDO99
[ Show all 12 ]
Synonym
Synonym HAR35_2446 HAR35_47059
Related Probe
BCD98
Hybridization_homologue: The two clones were isolated independently but exhibit the same RFLP patterns when hybridized to DNA from test genotypes, and thus are closely related in sequence.
Reference
Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
General Remarks
Uni-ZAP XR library OatUni-ZAPXR [c]
Type
cDNA
Sequence
[ Hide all but 1 of 7 ] BE439326 BE439358 CDO99_WHE05D09.s1 AI978357 AI978279 CDO099-5 CDO099-3
Polymorphism
CDO99 DraI CDO99 EcoRI CDO99 EcoRV
Linkage Group
1S,7S [b 5H]
Insert Enzyme
EcoRI XhoI
Source Species
Avena sativa
Source Germplasm
Brooks (oat)
Source Tissue
etiolated leaf
Insert Size
2.1
PCR size
2.1
GrainGenes Marker Report: CDO099
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