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GrainGenes Marker Report: Bmag0007

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Locus	Bmag0007
Type	Microsatellite
Synonym	Synonym Bmag7
Chromosome	7H
Map	Barley, B73xCPI-7H 17.9 [ Show all 15 ]
	[ Show Nearby Loci ]
Map Data	[ Hide all but 1 of 15 ] Barley, Abiotic QTL Consensus Barley, Agronomic QTL Consensus Barley, B73xCPI Barley, Consensus 2005, SNP Barley, Consensus 2007, SSR Barley, Consensus 2023, FHB Barley, Integrated, Marcel 2009 Barley, L94 x Vada, 2006 Barley, Lina x H.spont, SNP Barley, LxHs Barley, Nure x Tremois Barley, OWB Barley, OWB, 2004 Barley, OWB, 2005 Barley, OWB, SNP
Species	Hordeum spontaneum Hordeum vulgare
Probe	Bmag0007 Bmag7
Reference	Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Ramsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
Remark	Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' [ Show all 6 ]
Possible Orthologs	Bmag7
Probe for Locus	Bmag7
Locus	Bmag0007 Bmag7
Synonym	Other name Bmag0007
Reference	Ramsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
General Remarks	Insert contains repeat (AG)16(AC)16 Quality = 2: Single product, relatively strong stutter bands Diversity Index (DI) = 0.76
Type	PCR SSR
PCR primers	5' TGAAGGAAGAATAAACAACCAACA 3' 5' TCCCCTATTATAGTGACGGTGTG 3'
SSR size	185
Amplification Conditions	1 cycle of 3 min @ 94C, 1 min @ 58C, 1 min @ 72C, 30 cycles of 30 secs @ 94C, 30 secs @ 58C, 30 secs @ 72C, 1 cycle of 5 mins @ 72C.
Source Species	Hordeum vulgare