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GrainGenes Marker Report: Bmag0007

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Locus
Bmag0007
Type
Microsatellite
Synonym
SynonymBmag7
Chromosome
7H
Map
[ Hide all but 1 of 15 ]
Barley, B73xCPI-7H17.9
Barley-ConsensusFHB-7H21.94
Hordeum-Consensus2005-SNP-7H24.329
Hordeum-Consensus2007-SSR-7H20.62
Hordeum-LiHs-SNP-7H26.97
Hordeum-LxHs-7H27
Hordeum-OWB-2004-7H17.3
Hordeum-OWB-2005-7H14.4
Hordeum-OWB-7H14.2
Hordeum-OWB-SNP-7H15.22
Hordeum-QTLConsensus-Abiotic-7H24.33
Hordeum-QTLConsensus-Agronomic-7H24.33
Hv-Integrated2009-7H18.6
Hv-L94/Vada-2006-7H25.58
Hv-Nure/Tremois-7H14.3
[ Show Nearby Loci ]
Map Data
Barley, Abiotic QTL Consensus
[ Show all 15 ]
Species
Hordeum spontaneum
Hordeum vulgare
Probe
Bmag0007
Bmag7
Reference
ReferenceVarshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
ReferenceRamsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
Remark
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
[ Show all 6 ]
Possible Orthologs
Bmag7


Probe for Locus
Bmag7
Locus
Bmag0007
Bmag7
Synonym
Other nameBmag0007
Reference
ReferenceRamsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
General Remarks
Insert contains repeat (AG)16(AC)16
Quality = 2: Single product, relatively strong stutter bands
Diversity Index (DI) = 0.76
Type
PCR
SSR
PCR primers
5' TGAAGGAAGAATAAACAACCAACA 3'
5' TCCCCTATTATAGTGACGGTGTG 3'
SSR size
185
Amplification Conditions
1 cycle of 3 min @ 94C, 1 min @ 58C, 1 min @ 72C, 30 cycles of 30 secs @ 94C, 30 secs @ 58C, 30 secs @ 72C, 1 cycle of 5 mins @ 72C.
Source Species
Hordeum vulgare