Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: BCD98

[Submit comment/correction]

Locus	BCD98
Type	RFLP
Synonym	Other name bcd98 Synonym BCD098
Chromosome	1A 1B 1D 1H
Chromosome Arm	1AS 1BS 1DS 1HS
Map	1D.1R recombinants 55.5 [ Show all 13 ]
	[ Show Nearby Loci ]
Rearrangement	In segment I93 [ Show all 6 ]
Map Data	Barley consensus [ Show all 17 ]
Species	Avena sativa
Probe	BCD98
Homology	AAF35955.1 e-value: 3e-42 (AC024128) unknown protein [Arabidopsis thaliana] AAF35955.1 e-value: 2e-46 (AC024128) unknown protein [Arabidopsis thaliana]
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Remark	Number of populations contributing to the placement of BCD98 in the Barley, Consensus 2006 DArT maps = 1
Possible Orthologs	BCD098 [ Show all 23 ]
Probe	BCD98
Locus	BCD98 [ Show all 29 ]
Related Probe	CDO99
	Hybridization_homologue: The two clones were isolated independently but exhibit the same RFLP patterns when hybridized to DNA from test genotypes, and thus are closely related in sequence.
Reference	Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks	Lambda ZAP II library Bar.LambZAPII [c] Bar.LambZAPII
Type	cDNA
Sequence	[ Hide all but 1 of 8 ] BE438826 BE438849 BCD98_WHE2A0081 BCD98_WHE2A0082 L44100 BCD98 BCD98-5 BCD98-3
Polymorphism	BCD98 EcoRI Durums BCD98 EcoRI BCD98 XbaI
Linkage Group	1S, 7S, 5H 1S,7S[b 5LS]
Insert Enzyme	EcoRI
Source Species	Hordeum vulgare
Source Germplasm	Willis
Source Tissue	etiolated leaf
Insert Size	1.3
PCR size	1.3