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GrainGenes Marker Report: BCD98

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Locus	BCD98
Type	RFLP
Synonym	Other name bcd98 Synonym BCD098
Chromosome	1A 1B 1D 1H
Chromosome Arm	1AS 1BS 1DS 1HS
Map	1D.1R recombinants 55.5 [ Show all 13 ]
	[ Show Nearby Loci ]
Rearrangement	In segment I93 [ Show all 6 ]
Map Data	Barley consensus [ Show all 17 ]
Species	Avena sativa
Probe	BCD98
Homology	AAF35955.1 e-value: 3e-42 (AC024128) unknown protein [Arabidopsis thaliana] AAF35955.1 e-value: 2e-46 (AC024128) unknown protein [Arabidopsis thaliana]
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184. Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Remark	Number of populations contributing to the placement of BCD98 in the Barley, Consensus 2006 DArT maps = 1
Possible Orthologs	[ Hide all but 1 of 23 ] BCD098 BCD098-1H BCD098A BCD98B Xbcd98 Xbcd98-1 Xbcd98-1A Xbcd98-1A.1 Xbcd98-1A.2 Xbcd98-1B Xbcd98-1D Xbcd98-1R Xbcd98-1U Xbcd98-5A Xbcd98-7B Xbcd98.1 Xbcd98.2 Xbcd98A Xbcd98B Xcnl.BCD98 bcd98 bcd98-1A bcd98-7B
Probe	BCD98
Locus	BCD98 [ Show all 29 ]
Related Probe	CDO99
	Hybridization_homologue: The two clones were isolated independently but exhibit the same RFLP patterns when hybridized to DNA from test genotypes, and thus are closely related in sequence.
Reference	Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks	Lambda ZAP II library Bar.LambZAPII [c] Bar.LambZAPII
Type	cDNA
Sequence	BE438826 [ Show all 8 ]
Polymorphism	BCD98 EcoRI Durums BCD98 EcoRI BCD98 XbaI
Linkage Group	1S, 7S, 5H 1S,7S[b 5LS]
Insert Enzyme	EcoRI
Source Species	Hordeum vulgare
Source Germplasm	Willis
Source Tissue	etiolated leaf
Insert Size	1.3
PCR size	1.3