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GrainGenes Marker Report: BCD340E

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Locus	BCD340E
Type	RFLP
Synonym	Synonym BCD340
Chromosome	6H
Map	Barley-Consensus2-6H 65.4 [ Show all 13 ]
	[ Show Nearby Loci ]
QTL with Locus Marker	QSss.StMo-6H
Map Data	[ Hide all but 1 of 13 ] Barley consensus 2 Barley, Abiotic QTL Consensus Barley, Agronomic QTL Consensus Barley, BinMap 2005 Barley, Consensus 2005, SNP Barley, Consensus 2006, DArT Barley, Consensus 2006, Marcel Barley, Integrated, Marcel 2009 Barley, Steptoe x Morex, SNP Barley, Steptoe x Morex, SSAP Barley, SxM Barley, SxM basemap Barley, SxM, Feed QTLs
Probe	BCD340
Homology	BAB08277.1 e-value: 1e-12 (AB008267) gb|AAF24960.1~gene_id:MMG4.16~strong similarity to unknown protein [Arabidopsis thaliana] BAB08277.1 e-value: 4e-27 (AB008267) gb|AAF24960.1~gene_id:MMG4.16~strong similarity to unknown protein [Arabidopsis thaliana]
Reference	Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source	Blake, Tom 05.04.19
Remark	Number of populations contributing to the placement of BCD340E in the Barley, Consensus 2006 DArT maps = 1 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Possible Orthologs	BCD340 [ Show all 11 ]
Probe for Locus	BCD340
Locus	BCD340A [ Show all 14 ]
Synonym	Synonym HAR35_20684 HAR35_21463
Reference	Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
General Remarks	Lambda ZAP II library Bar.LambZAPII [c]
Type	cDNA
Sequence	BE438699 BE438791 BCD340_WHE1C0091 BCD340_WHE1C0092 BCD340-5
Linkage Group	6L
Insert Enzyme	EcoRI
Source Species	Hordeum vulgare
Source Germplasm	Willis
Source Tissue	etiolated leaf
Insert Size	1
PCR size	1