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GrainGenes Marker Report: BCD135

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Locus
BCD135
Type
RFLP
Synonym
SynonymBCD135
Chromosome
2A
2B
2D
2H
7H
Chromosome Arm
2AL
2DL
Map
Barley-consensus-2003-7H22.2
[ Show all 12 ]
[ Show Nearby Loci ]
Map Data
Barley consensus 2003
[ Show all 13 ]
Probe
BCD135
Homology
A44971e-value: 6.8hypothetical protein 1 - Plasmodium brasilianum
CAA74577.1e-value: 0.56(Y14166) attachment region binding protein [Gallus gallus]
CAA74577.1e-value: 1.1(Y14166) attachment region binding protein [Gallus gallus]
AAF47522.1e-value: 3.6(AE003472) CG13918 gene product [Drosophila melanogaster]
Reference
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source
Langridge, Peter J.
Remark
Number of populations contributing to the placement of BCD135 in the Barley, Consensus 2006 DArT maps = 1
Possible Orthologs
BCD135a
[ Show all 10 ]
Probe
BCD135
Locus
BCD135a
[ Show all 14 ]
Synonym
SynonymHAR35_18261
HAR35_18262
HAR35_47679
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Lambda ZAP II library
Bar.LambZAPII [c]
Bar.LambZAPII
Type
cDNA
Sequence
[ Hide all but 1 of 9 ]
BE438835
BE438862
BE438819
BE438842
BCD135_WHE2A0091
BCD135_WHE2A0092
BCD135_WHE2H0011
BCD135_WHE2H0012
BCD135-5
Polymorphism
BCD135 EcoRI
Linkage Group
2L
Insert Enzyme
EcoRI
Source Species
Hordeum vulgare
Source Germplasm
Willis
Source Tissue
etiolated leaf
Insert Size
0.7
PCR size
0.7