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GrainGenes Marker Report: BCD098

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Locus	BCD098
Type	RFLP
Synonym	Synonym BCD98
Chromosome	1H
Map	Barley-ConsensusFHB-1H 37.8 [ Show all 14 ]
	[ Show Nearby Loci ]
Map Data	Barley, Abiotic QTL Consensus [ Show all 14 ]
Species	Hordeum vulgare
Probe	BCD98
Homology	AAF35955.1 e-value: 3e-42 (AC024128) unknown protein [Arabidopsis thaliana] AAF35955.1 e-value: 2e-46 (AC024128) unknown protein [Arabidopsis thaliana]
Reference	Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Mesfin A et al. (2003) Quantitative trait loci for fusarium head blight resistance in barley detected in a two-rowed by six-rowed population Crop Science 43:307-318.
Data Source	Close, Timothy J.
Remark	Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex,Oregon Wolfe Barleys Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex; Oregon Wolfe Dom x Rec Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'
Possible Orthologs	BCD98 [ Show all 23 ]
Probe for Locus	BCD98
Locus	BCD98 [ Show all 29 ]
Related Probe	CDO99
	Hybridization_homologue: The two clones were isolated independently but exhibit the same RFLP patterns when hybridized to DNA from test genotypes, and thus are closely related in sequence.
Reference	Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
General Remarks	Lambda ZAP II library Bar.LambZAPII [c] Bar.LambZAPII
Type	cDNA
Sequence	[ Hide all but 1 of 8 ] BE438826 BE438849 BCD98_WHE2A0081 BCD98_WHE2A0082 L44100 BCD98 BCD98-5 BCD98-3
Polymorphism	BCD98 EcoRI Durums BCD98 EcoRI BCD98 XbaI
Linkage Group	1S, 7S, 5H 1S,7S[b 5LS]
Insert Enzyme	EcoRI
Source Species	Hordeum vulgare
Source Germplasm	Willis
Source Tissue	etiolated leaf
Insert Size	1.3
PCR size	1.3