Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: Amy1 (Hordeum)

[Submit comment/correction]

Gene	Amy1 (Hordeum)
Full Name	Alpha-amylase 1
Gene Class	alpha-Amylase
Locus	Amy-1 Amy1 AMYI JR115
Candidate Locus	Amy1
Reference	Jacobsen JV and Close TJ (1991) Control of transient expression of chimaeric genes by gibberellic acid and abscisic acid in protoplasts prepared from mature barley aleurone layers Plant Molecular Biology 16:713-724. Knox CAP et al. (1987) Structure and organization of two divergent alpha amylase genes from barley Plant Molecular Biology 9:3-18.
Gene Product	alpha-amylase
Chromosome	6H
Chromosome Arm	6HL
Clone	103 [ Show all 8 ]
Sequence	M17125 M17126 X54643
Data Source	Karakousis, Angelo 96.10
Info Source	von Wettstein-Knowles P (1993) Barley (Hordeum vulgare) 2N = 14. Genetic maps: Locus Maps of Complex Genomes.
Locus Associated with Gene	JR115
Map	Hordeum-Bins-6H 97.9
	[ Show Nearby Loci ]
Map Data	Barley, BinMap 2005
Associated Gene	Amy1 (Hordeum)
Gene Class	alpha-Amylase
Reference	Kleinhofs A et al. (1993) A molecular, isozyme and morphological map of the barley (Hordeum vulgare) genome Theoretical and Applied Genetics 86:705-712.
Remark	The JR115 RFLP/STS is a gene marker for the Amy1 (Hordeum) gene JR115 is a plasmid used to map Amy1
Locus Associated with Gene	Amy-1
Type	Gene
Chromosome	6H
Map	Hordeum-Heun-6H 95.6
	[ Show Nearby Loci ]
Map Data	Barley, PxN
Associated Gene	Amy1 (Hordeum)
Gene Class	alpha-Amylase
Possible Orthologs	alpha-Amy-A1 [ Show all 22 ]
Locus Associated with Gene	Amy1
Type	Gene RFLP
Synonym	Synonym Amy1 (Hordeum)
Chromosome	6H
Chromosome Arm	6HL
Map	Barley-consensus-2003-6H 68.1 [ Show all 28 ]
	[ Show Nearby Loci ]
In QTL	QAa.ChHa-6H QAa.HaTR-6H QDp.HaTR-6H QEv.HaTR-6H
Map Data	[ Hide all but 1 of 28 ] Barley consensus Barley consensus 2 Barley consensus 2003 Barley genes 2 Barley, Abiotic QTL Consensus Barley, Agronomic QTL Consensus Barley, BinMap 2005 Barley, Consensus 2005, SNP Barley, Consensus 2006, DArT Barley, Consensus 2006, Marcel Barley, Consensus 2023, FHB Barley, Dicktoo x Morex Barley, DxM, Dhn genes Barley, FxS, FHB QTL Barley, HxM/QTL Barley, HxT Barley, HxT basemap Barley, Integrated, Marcel 2009 Barley, IxF  Mapped_with_probe  JR143 Barley, KxM  Mapped_with_probe  JR143 Barley, Lina x H.spont, SNP Barley, LxHs Barley, Steptoe x Morex, SNP Barley, Steptoe x Morex, SSAP Barley, SxM Barley, SxM basemap Barley, SxM, Feed QTLs Barley, VGxA
2 Point Data	Xris6/Amy1
Species	Hordeum vulgare
Probe	JR143
Associated Gene	Amy1 (Hordeum)
Candidate Gene	Amy1 (Hordeum)
Gene Class	alpha-Amylase
Reference	Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Mesfin A et al. (2003) Quantitative trait loci for fusarium head blight resistance in barley detected in a two-rowed by six-rowed population Crop Science 43:307-318. Choi DW et al. (2000) Map locations of barley Dhn genes determined by gene-specific PCR Theoretical and Applied Genetics 101:350-354.
Data Source	Blake, Tom 05.04.19 Graner, Andreas 96.11.14 Langridge, Peter J.
Remark	Number of populations contributing to the placement of Amy1 in the Barley, Consensus 2006 DArT maps = 2 Changed position from 969 for consistency Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex,Igri x Franka Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex; Igri x Franka
Possible Orthologs	alpha-Amy-A1 [ Show all 22 ]
Locus Associated with Gene	AMYI
Type	Gene RFLP
Map	Hordeum-CxH-6H 87.83 Hordeum-CxS-6H 117.89 Hordeum-GxH-6H 101.9
	[ Show Nearby Loci ]
Map Data	Barley, CxH  Mapped_with_probe  AMYI Barley, CxS  Mapped_by_function  Amy1 (Hordeum) Barley, GxH  Mapped_with_probe  AMYI
Probe	AMYI
Associated Gene	Amy1 (Hordeum)
Gene Class	alpha-Amylase
Locus Candidate for Gene	Amy1
Type	Gene RFLP
Synonym	Synonym Amy1 (Hordeum)
Chromosome	6H
Chromosome Arm	6HL
Map	Barley-consensus-2003-6H 68.1 [ Show all 28 ]
	[ Show Nearby Loci ]
In QTL	QAa.ChHa-6H QAa.HaTR-6H QDp.HaTR-6H QEv.HaTR-6H
Map Data	[ Hide all but 1 of 28 ] Barley consensus Barley consensus 2 Barley consensus 2003 Barley genes 2 Barley, Abiotic QTL Consensus Barley, Agronomic QTL Consensus Barley, BinMap 2005 Barley, Consensus 2005, SNP Barley, Consensus 2006, DArT Barley, Consensus 2006, Marcel Barley, Consensus 2023, FHB Barley, Dicktoo x Morex Barley, DxM, Dhn genes Barley, FxS, FHB QTL Barley, HxM/QTL Barley, HxT Barley, HxT basemap Barley, Integrated, Marcel 2009 Barley, IxF  Mapped_with_probe  JR143 Barley, KxM  Mapped_with_probe  JR143 Barley, Lina x H.spont, SNP Barley, LxHs Barley, Steptoe x Morex, SNP Barley, Steptoe x Morex, SSAP Barley, SxM Barley, SxM basemap Barley, SxM, Feed QTLs Barley, VGxA
2 Point Data	Xris6/Amy1
Species	Hordeum vulgare
Probe	JR143
Associated Gene	Amy1 (Hordeum)
Candidate Gene	Amy1 (Hordeum)
Gene Class	alpha-Amylase
Reference	Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Mesfin A et al. (2003) Quantitative trait loci for fusarium head blight resistance in barley detected in a two-rowed by six-rowed population Crop Science 43:307-318. Choi DW et al. (2000) Map locations of barley Dhn genes determined by gene-specific PCR Theoretical and Applied Genetics 101:350-354.
Data Source	Blake, Tom 05.04.19 Graner, Andreas 96.11.14 Langridge, Peter J.
Remark	Number of populations contributing to the placement of Amy1 in the Barley, Consensus 2006 DArT maps = 2 Changed position from 969 for consistency Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex,Igri x Franka Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex; Igri x Franka
Possible Orthologs	alpha-Amy-A1 [ Show all 22 ]
Locus	Amy1 (Hordeum)
Synonym	Synonym Amy1

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.