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GrainGenes Marker Report: Amy1

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Gene	AMY1
Gene Product	AMY1
Sequence	[ Hide all but 1 of 114 ] FJ866837 FJ866837_1.cds FJ866838 FJ866838_1.cds FJ866839 FJ866839_1.cds FJ866840 FJ866840_1.cds FJ866841 FJ866841_1.cds FJ866842 FJ866842_1.cds FJ866843 FJ866843_1.cds FJ866844 FJ866844_1.cds FJ866845 FJ866845_1.cds FJ866846 FJ866846_1.cds FJ866847 FJ866847_1.cds FJ866848 FJ866848_1.cds FJ866849 FJ866849_1.cds FJ866850 FJ866850_1.cds FJ866851 FJ866851_1.cds FJ866852 FJ866852_1.cds FJ866853 FJ866853_1.cds FJ866854 FJ866854_1.cds FJ866855 FJ866855_1.cds FJ866856 FJ866856_1.cds FJ866857 FJ866857_1.cds FJ866858 FJ866858_1.cds FJ866859 FJ866859_1.cds FJ866860 FJ866860_1.cds FJ866861 FJ866861_1.cds FJ866862 FJ866862_1.cds FJ866863 FJ866863_1.cds FJ866864 FJ866864_1.cds FJ866865 FJ866865_1.cds FJ866866 FJ866866_1.cds FJ866867 FJ866867_1.cds FJ866868 FJ866868_1.cds FJ866869 FJ866869_1.cds FJ866870 FJ866870_1.cds FJ866871 FJ866871_1.cds FJ866872 FJ866872_1.cds FJ866873 FJ866873_1.cds FJ866874 FJ866874_1.cds FJ866875 FJ866875_1.cds FJ866876 FJ866876_1.cds FJ866877 FJ866877_1.cds FJ866878 FJ866878_1.cds FJ866879 FJ866879_1.cds FJ866880 FJ866880_1.cds FJ866881 FJ866881_1.cds FJ866882 FJ866882_1.cds FJ866883 FJ866883_1.cds FJ866884 FJ866884_1.cds FJ866885 FJ866885_1.cds FJ866886 FJ866886_1.cds FJ866887 FJ866887_1.cds FJ866888 FJ866888_1.cds FJ866889 FJ866889_1.cds FJ866890 FJ866890_1.cds FJ866891 FJ866891_1.cds FJ866892 FJ866892_1.cds FJ867318 FJ867318_1.cds
Locus	Amy1
Type	Gene RFLP
Synonym	Synonym Amy1 (Hordeum)
Chromosome	6H
Chromosome Arm	6HL
Map	Barley-consensus-2003-6H 68.1 [ Show all 28 ]
	[ Show Nearby Loci ]
QTL with Locus Marker	QAa.ChHa-6H QAa.HaTR-6H QDp.HaTR-6H QEv.HaTR-6H
Map Data	Barley consensus [ Show all 28 ]
2 Point Data	Xris6/Amy1 Distance: 14 cM
Species	Hordeum vulgare
Probe	JR143
Associated Gene	Amy1 (Hordeum)
Candidate Gene	Amy1 (Hordeum)
Gene Class	alpha-Amylase
Reference	Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Mesfin A et al. (2003) Quantitative trait loci for fusarium head blight resistance in barley detected in a two-rowed by six-rowed population Crop Science 43:307-318. Choi DW et al. (2000) Map locations of barley Dhn genes determined by gene-specific PCR Theoretical and Applied Genetics 101:350-354.
Data Source	Blake, Tom 05.04.19 Graner, Andreas 96.11.14 Langridge, Peter J.
Remark	Number of populations contributing to the placement of Amy1 in the Barley, Consensus 2006 DArT maps = 2 Changed position from 969 for consistency Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex,Igri x Franka Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex; Igri x Franka
Possible Orthologs	alpha-Amy-A1 [ Show all 22 ]
Probe for Locus	JR143
Locus	Amy1
External Databases	DDBJ EMBL GenBank
Reference	Khursheed B and Rogers JC (1988) Barley alpha amylase genes quantitative comparison of steady-state messenger RNA levels from individual members of the two different families in aleurone cells Journal of Biological Chemistry 263:18953-18960.
General Remarks	Amylase
Sequence	J04203
Linkage Group	6
Source Species	Hordeum vulgare
Insert Size	2