Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: Amy1

[Submit comment/correction]

Gene	AMY1
Gene Product	AMY1
Sequence	FJ866837 [ Show all 114 ]
Locus	Amy1
Type	Gene RFLP
Synonym	Synonym Amy1 (Hordeum)
Chromosome	6H
Chromosome Arm	6HL
Map	Barley-consensus-2003-6H 68.1 [ Show all 28 ]
	[ Show Nearby Loci ]
QTL with Locus Marker	QAa.ChHa-6H QAa.HaTR-6H QDp.HaTR-6H QEv.HaTR-6H
Map Data	[ Hide all but 1 of 28 ] Barley consensus Barley consensus 2 Barley consensus 2003 Barley genes 2 Barley, Abiotic QTL Consensus Barley, Agronomic QTL Consensus Barley, BinMap 2005 Barley, Consensus 2005, SNP Barley, Consensus 2006, DArT Barley, Consensus 2006, Marcel Barley, Consensus 2023, FHB Barley, Dicktoo x Morex Barley, DxM, Dhn genes Barley, FxS, FHB QTL Barley, HxM/QTL Barley, HxT Barley, HxT basemap Barley, Integrated, Marcel 2009 Barley, IxF  Mapped_with_probe  JR143 Barley, KxM  Mapped_with_probe  JR143 Barley, Lina x H.spont, SNP Barley, LxHs Barley, Steptoe x Morex, SNP Barley, Steptoe x Morex, SSAP Barley, SxM Barley, SxM basemap Barley, SxM, Feed QTLs Barley, VGxA
2 Point Data	Xris6/Amy1 Distance: 14 cM
Species	Hordeum vulgare
Probe	JR143
Associated Gene	Amy1 (Hordeum)
Candidate Gene	Amy1 (Hordeum)
Gene Class	alpha-Amylase
Reference	Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Mesfin A et al. (2003) Quantitative trait loci for fusarium head blight resistance in barley detected in a two-rowed by six-rowed population Crop Science 43:307-318. Choi DW et al. (2000) Map locations of barley Dhn genes determined by gene-specific PCR Theoretical and Applied Genetics 101:350-354.
Data Source	Blake, Tom 05.04.19 Graner, Andreas 96.11.14 Langridge, Peter J.
Remark	Number of populations contributing to the placement of Amy1 in the Barley, Consensus 2006 DArT maps = 2 Changed position from 969 for consistency Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex,Igri x Franka Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex; Igri x Franka
Possible Orthologs	alpha-Amy-A1 [ Show all 22 ]
Probe for Locus	JR143
Locus	Amy1
External Databases	DDBJ EMBL GenBank
Reference	Khursheed B and Rogers JC (1988) Barley alpha amylase genes quantitative comparison of steady-state messenger RNA levels from individual members of the two different families in aleurone cells Journal of Biological Chemistry 263:18953-18960.
General Remarks	Amylase
Sequence	J04203
Linkage Group	6
Source Species	Hordeum vulgare
Insert Size	2