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GrainGenes Marker Report: Amy1

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Gene	AMY1
Gene Product	AMY1
Sequence	FJ866837 [ Show all 114 ]
Locus	Amy1
Type	Gene RFLP
Synonym	Synonym Amy1 (Hordeum)
Chromosome	6H
Chromosome Arm	6HL
Map	[ Hide all but 1 of 28 ] Barley-consensus-2003-6H 68.1 Barley-Consensus-6H 19.6 Barley-Consensus2-6H 84.9 Barley-ConsensusFHB-6H 79.2 Hordeum-Bins-6H 97.9 Hordeum-Consensus2005-SNP-6H 98.627 Hordeum-Consensus2006-DArT-6H 95.9 Hordeum-DxM-6H 71.9 Hordeum-DxM-Dnh-6H 71.9 Hordeum-FxS-FHB-QTL-6H 94.5 Hordeum-Genes2-6H -25 Hordeum-Giese1-6H 87 Hordeum-Graner2-6H 79.4 Hordeum-HxM-base-6H 54.5 Hordeum-HxT-base-6H 96.6 Hordeum-KxM-6H 119.2 Hordeum-LiHs-SNP-6H 18.31 Hordeum-LxHs-6H 111 Hordeum-NABGMP1-6H 80.2 Hordeum-NABGMP2-6H 95.6 Hordeum-QTLConsensus-Abiotic-6H 98.63 Hordeum-QTLConsensus-Agronomic-6H 98.63 Hordeum-StMo-SNP-6H 91.26 Hordeum-SxM-base-6H 98.2 Hordeum-SxM-FeedQTL-6H 80.2 Hordeum-SxM-SSAP-6H 97 Hv-Consensus2006-Marcel-6H 86.37 Hv-Integrated2009-6H 88.1
	[ Show Nearby Loci ]
QTL with Locus Marker	QAa.ChHa-6H QAa.HaTR-6H QDp.HaTR-6H QEv.HaTR-6H
Map Data	Barley consensus [ Show all 28 ]
2 Point Data	Xris6/Amy1 Distance: 14 cM
Species	Hordeum vulgare
Probe	JR143
Associated Gene	Amy1 (Hordeum)
Candidate Gene	Amy1 (Hordeum)
Gene Class	alpha-Amylase
Reference	Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Mesfin A et al. (2003) Quantitative trait loci for fusarium head blight resistance in barley detected in a two-rowed by six-rowed population Crop Science 43:307-318. Choi DW et al. (2000) Map locations of barley Dhn genes determined by gene-specific PCR Theoretical and Applied Genetics 101:350-354.
Data Source	Blake, Tom 05.04.19 Graner, Andreas 96.11.14 Langridge, Peter J.
Remark	Number of populations contributing to the placement of Amy1 in the Barley, Consensus 2006 DArT maps = 2 Changed position from 969 for consistency Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex,Igri x Franka Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex; Igri x Franka
Possible Orthologs	alpha-Amy-A1 [ Show all 22 ]
Probe for Locus	JR143
Locus	Amy1
External Databases	DDBJ EMBL GenBank
Reference	Khursheed B and Rogers JC (1988) Barley alpha amylase genes quantitative comparison of steady-state messenger RNA levels from individual members of the two different families in aleurone cells Journal of Biological Chemistry 263:18953-18960.
General Remarks	Amylase
Sequence	J04203
Linkage Group	6
Source Species	Hordeum vulgare
Insert Size	2