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GrainGenes Marker Report: ABG471

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Locus	abg471
Type	RFLP STS
Synonym	Synonym alm (Hordeum) POPA3_0431
Chromosome	3H
Chromosome Arm	3HS
Map	[ Hide all but 1 of 23 ] Barley-Consensus-3H -19 Barley-Consensus2-3H 23.7 Hordeum-AxK-3H 35.3 Hordeum-Bins-3H 38 Hordeum-Consensus2005-SNP-3H 30.314 Hordeum-Consensus2006-DArT-3H 44.3 Hordeum-GxH-3H 71.22 Hordeum-HxT-base-3H 17.2 Hordeum-KxM-3H 35.4 Hordeum-NABGMP1-3H 32.7 Hordeum-NABGMP2-3H 17.7 Hordeum-QTLConsensus-Abiotic-3H 30.31 Hordeum-QTLConsensus-Agronomic-3H 30.31 Hordeum-StMo-SNP-3H 30.96 Hordeum-SxM-base-3H 33.3 Hordeum-SxM-FeedQTL-3H 32.7 Hordeum-SxM-SSAP-3H 32.6 Hordeum-SxM-SSR-3H 30.5 Hv-Consensus2006-Marcel-3H 33.14 Hv-Integrated2009-3H 44.1 Physical-3B 46.09 Wheat, Yr genes and QTL 3A 21.2 Wheat, Yr genes and QTL 3B 30.7
	[ Show Nearby Loci ]
QTL with Locus Marker	QBgnm.StMo-3H QCww.StMo-3H QHd.HaMo-3H QHt.HaMo-3H.1 QHt.HaMo-3H.2
Map Data	3B Physical [ Show all 22 ]
Probe	ABG471
Associated Gene	alm (Hordeum)
Gene Class	Albino lemma
Reference	Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Li JZ et al. (2003) Development and genetic mapping of 127 new microsatellite markers in barley Theoretical and Applied Genetics 107:1021-1027. Kleinhofs A (1997) Integrating Barley RFLP and Classical Marker Maps: Barley Genetics Newsletter 27:105.
Data Source	Blake, Tom 05.04.19
Remark	Number of populations contributing to the placement of ABG471 in the Barley, Consensus 2006 DArT maps = 1 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Possible Orthologs	ABG471-3H [ Show all 9 ]
Gene Associated with Locus	alm (Hordeum)
Full Name	Albino lemma
Synonym	Synonym al (Hordeum) von Wettstein-Knowles P (1993) Barley (Hordeum vulgare) 2N = 14. Genetic maps: Locus Maps of Complex Genomes.
Gene Class	Albino lemma
Allele	Alm (Hordeum) alm (Hordeum)
Locus	abg471 alm
Chromosome	3H
Image	Barley, alm (albino lemma) phenotype Barley, Alm (green lemma) phenotype
Data Source	Franckowiak, Jerome D. 96.10
Probe	ABG471
Locus	abg471 [ Show all 11 ]
Synonym	Synonym HAR35_15527 HAR35_15528
External Databases	DDBJ EMBL GenBank
Remarks	Shin Ebisu16 gDNA
Type	Genomic STS
PCR primers	TGG ATT TGA TGG CGG AGA CC CAA GAC TGA CAA CAC AAG AC
Sequence	L44027 ABG471 ABG471-5 ABG471-3
Polymorphism	ABG471 XbaI
Linkage Group	Group 3
Source Species	Hordeum vulgare
Insert Size	1.6