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GrainGenes Marker Report: ABC455

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Locus	ABC455
Type	RFLP
Synonym	Synonym rsm1 (Hordeum)
Chromosome	7H
Chromosome Arm	7HS
Map	Barley-Consensus-7H -0.3 [ Show all 17 ]
	[ Show Nearby Loci ]
QTL with Locus Marker	QBgnm.StMo-7H.2 QBgsk.StMo-7H QBgsk.StMo-7H.2
Map Data	[ Hide all but 1 of 17 ] Barley consensus Barley consensus 2 Barley, Abiotic QTL Consensus Barley, Agronomic QTL Consensus Barley, BinMap 2005 Barley, Cali-sib x BowmanBC, QTL Barley, Consensus 2005, SNP Barley, Consensus 2006, Marcel Barley, Consensus 2007, SSR Barley, Consensus 2023, FHB Barley, Dicktoo x Morex Barley, GxH Barley, Integrated, Marcel 2009 Barley, IxF Barley, Steptoe x Morex, SNP Barley, SxM Barley, SxM, Feed QTLs
Species	Hordeum vulgare
Probe	ABC455
Associated Gene	rsm1 (Hordeum)
Gene Class	Reaction to barley stripe mosaic virus
Reference	Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Kleinhofs A et al. (1993) A molecular, isozyme and morphological map of the barley (Hordeum vulgare) genome Theoretical and Applied Genetics 86:705-712.
Data Source	Blake, Tom 05.04.19
Remark	Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex,Igri x Franka Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex; Igri x Franka Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'
Possible Orthologs	Xabc455 Xabc455-7B abc455 abc455-7B
Gene Associated with Locus	rsm1 (Hordeum)
Full Name	Reaction to BSMV 1
Gene Class	Reaction to barley stripe mosaic virus
Pathology	Barley Stripe Mosaic
Locus	ABC455 rsm1
URL	Gene report page at the International Database for Barley Genes and Barley Genetic Stocks (NordGen)
Chromosome	7H
Data Source	Franckowiak, Jerome D. 96.10
Probe	ABC455
Locus	ABC455 Xabc455-7B Xabc455 abc455 abc455-7B
Synonym	Synonym HAR35_1657 HAR35_40867
External Databases	DDBJ EMBL GenBank
Remarks	Steptoe leaf cDNA
Type	cDNA STS
PCR primers	GTG GGT TCC TCT TTG TTG AG CAC GCT CCT AAA CGC ACT CC
STS primers	5' AAGGTTGATGGAAGCCAGTTG 5' CTAGTAGGGCCGATAACGCC
STS size	ca. 800
Amplification Conditions	STS annealing temperature 58-60 oC
Sequence	L43954 ABC455 ABC455-5 ABC455-3
Polymorphism	ABC455 DraI ABC455 EcoRI ABC455 EcoRV ABC455 HindIII ABC455 XbaI
Linkage Group	Group 1
Source Species	Hordeum vulgare
Insert Size	1