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GrainGenes Marker Report: ABC310b

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Locus	ABC310b
Type	RFLP SNP
Synonym	Synonym ABC310
Chromosome	5H 7H
Chromosome Arm	7HL
Map	Barley-consensus-2003-5H 79.5 [ Show all 26 ]
	[ Show Nearby Loci ]
Map Data	Barley consensus 2 [ Show all 26 ]
Species	Hordeum vulgare
Probe	ABC310
Reference	[ Hide all but 1 of 6 ] Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source	Blake, Tom 05.04.19 Close, Timothy J. Langridge, Peter J.
Remark	Number of populations contributing to the placement of ABC310B in the Barley, Consensus 2006 DArT maps = 2 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex,Oregon Wolfe Barleys,Igri x Franka Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex; Oregon Wolfe Dom x Rec; Igri x Franka Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'
Possible Orthologs	ABC310 [ Show all 16 ]
Probe for Locus	ABC310
Locus	ABC310 [ Show all 19 ]
General Remarks	Steptoe malt cDNA
Type	cDNA STS
PCR primers	TCC TGA TGG TCC TCT TAT GC ACA TAG TTC TCT TCC CAG TA
STS primers	5' CTTCCCTCTCCTTCAAAGGCC 5' CCCGGTTCAAAAAAGAAGAT
STS size	ca. 1500
Amplification Conditions	STS annealing temperature 55-58 oC
Sequence	BQ548064 BQ548065 ABC310 ABC310-5 ABC310-3
Linkage Group	Groups 7 &1
Source Species	Hordeum vulgare
Insert Size	1.6