GrainGenes Marker Report: ABC310b
Locus
ABC310b
Type
RFLP SNP
Synonym
Synonym ABC310
Chromosome
5H 7H
Chromosome Arm
7HL
Map
Barley-consensus-2003-5H 79.5
[ Show all 26 ]
[ Show Nearby Loci ]
Map Data
Barley consensus 2
[ Show all 26 ]
Species
Hordeum vulgare
Probe
ABC310
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
[ Show all 6 ]
Data Source
Blake, Tom 05.04.19 Close, Timothy J. Langridge, Peter J.
Remark
Number of populations contributing to the placement of ABC310B in the Barley, Consensus 2006 DArT maps = 2 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex,Oregon Wolfe Barleys,Igri x Franka Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex; Oregon Wolfe Dom x Rec; Igri x Franka Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'
Possible Orthologs
ABC310
[ Show all 16 ]
Probe for Locus
ABC310
Locus
[ Hide all but 1 of 19 ] ABC310 Xabc310-7B Xabc310-4A ABC310b HD001E21 ABC310A Xabc310-5B Xabc310-7A Xabc310-5B.1 Xabc310-5B.2 Xabc310-5S Xabc310b Xabc310a Xabc310.1 ABC310b-7H Xabc310 Xabc310-4U Xabc310.2 abc310-3B
General Remarks
Steptoe malt cDNA
Type
cDNA STS
PCR primers
TCC TGA TGG TCC TCT TAT GC
ACA TAG TTC TCT TCC CAG TA
STS primers
5' CTTCCCTCTCCTTCAAAGGCC
5' CCCGGTTCAAAAAAGAAGAT
STS size
ca. 1500
Amplification Conditions
STS annealing temperature 55-58 oC
Sequence
BQ548064 BQ548065 ABC310 ABC310-5 ABC310-3
Linkage Group
Groups 7 &1
Source Species
Hordeum vulgare
Insert Size
1.6
GrainGenes Marker Report: ABC310b
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