GrainGenes Marker Report: ABC261
Locus
ABC261
Type
RFLP STS
Synonym
Synonym Blp (Hordeum)
Chromosome
1H
Chromosome Arm
1HL
Map
Barley-Consensus-1H 100.5
[ Show all 27 ]
[ Show Nearby Loci ]
QTL with Locus Marker
QSsg.HaTR-1H
Map Data
Barley consensus
[ Show all 27 ]
Species
Hordeum vulgare
Probe
ABC261
Associated Gene
Blp (Hordeum)
Gene Class
Black lemma and pericarp
Reference
[ Hide all but 1 of 7 ] 
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184.
Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Kleinhofs A et al. (1993) A molecular, isozyme and morphological map of the barley (Hordeum vulgare) genome Theoretical and Applied Genetics 86:705-712.
Data Source
Blake, Tom 05.04.19 Close, Timothy J.
Remark
Number of populations contributing to the placement of ABC261 in the Barley, Consensus 2006 DArT maps = 2 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex,Oregon Wolfe Barleys Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex; Oregon Wolfe Dom x Rec Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'
Possible Orthologs
Xabc261
Gene Associated with Locus
Blp (Hordeum)
Full Name
Black lemma and pericarp
Synonym
Synonym B von Wettstein-Knowles P (1993) Barley (Hordeum vulgare) 2N = 14. Genetic maps: Locus Maps of Complex Genomes.
Gene Class
Black lemma and pericarp
Allele
Blp (Hordeum) blp (Hordeum)
Locus
ABC261 Blp mB
Chromosome
1H
Image
Barley, Blp (black head) phenotype.1 Barley, Blp (black head) phenotype.2 Barley, blp (non-black head) phenotype
Data Source
Franckowiak, Jerome D. 96.10
Probe
ABC261
Locus
ABC261 HI057G22 HD008L1 Xabc261 ABC261-1H
External Databases
DDBJ EMBL GenBank
Type
cDNA STS
PCR primers
AGGAAGCTCAAGAAGGTGAA
AAAGTCAAGAGTTGCATCAA
Sequence
L43942 ABC261
Source Species
Hordeum vulgare
GrainGenes Marker Report: ABC261
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