Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: ABC167B

[Submit comment/correction]

Locus	ABC167B
Type	RFLP
Synonym	Synonym ABC167
Chromosome	2H
Map	Barley-Consensus2-2H 71.6 [ Show all 13 ]
	[ Show Nearby Loci ]
Map Data	[ Hide all but 1 of 13 ] Barley consensus 2 Barley, Abiotic QTL Consensus Barley, Agronomic QTL Consensus Barley, BinMap 2005 Barley, Consensus 2005, SNP Barley, Consensus 2006, DArT Barley, Consensus 2006, Marcel Barley, Integrated, Marcel 2009 Barley, Steptoe x Morex, SNP Barley, Steptoe x Morex, SSAP Barley, SxM Barley, SxM basemap Barley, SxM, Feed QTLs
Probe	ABC167
Reference	Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source	Blake, Tom 05.04.19
Remark	Number of populations contributing to the placement of ABC167B in the Barley, Consensus 2006 DArT maps = 1 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Possible Orthologs	ABC167 ABC167a
Probe for Locus	ABC167
Locus	ABC167a ABC167B ABC167
Synonym	Synonym HAR35_42143
External Databases	DDBJ EMBL GenBank
General Remarks	Steptoe malt cDNA
Type	cDNA STS
PCR primers	TGG CTG GCG GAA TGG AAT AA ACA AGT TTG GAT GAT GAA AT
STS primers	5' CAGCCCATGAGCTAGTGTTCC 5' TGGATGATGAAATTCCAGAGG
STS size	202
Amplification Conditions	STS annealing temperature 52-55 oC
Sequence	L43934 ABC167 ABC167-5
Linkage Group	Groups 1 & 2 2
Source Species	Hordeum vulgare
Source Germplasm	Steptoe (barley)
Source Tissue	malt
Insert Size	0.4