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GrainGenes Marker Report: ABC152D

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Locus	ABC152D
Type	RFLP
Synonym	Synonym ABC152
Chromosome	2H
Map	[ Hide all but 1 of 14 ] Barley-Consensus2-2H 83.3 Hordeum-Bins-2H 84.8 Hordeum-Consensus2005-SNP-2H 79.746 Hordeum-Consensus2006-DArT-2H 89.7 Hordeum-NABGMP1-2H 90.2 Hordeum-QTLConsensus-Abiotic-2H 79.75 Hordeum-QTLConsensus-Agronomic-2H 79.75 Hordeum-StMo-SNP-2H 80.07 Hordeum-SxM-base-2H 86.3 Hordeum-SxM-FeedQTL-2H 90.2 Hordeum-SxM-SSAP-2H 88.8 Hordeum-SxM-SSR-2H 112.1 Hv-Consensus2006-Marcel-2H 83.69 Hv-Integrated2009-2H 78.5
	[ Show Nearby Loci ]
QTL with Locus Marker	QSss.StMo-2H.2 QSss.StMo-2H.3
Map Data	Barley consensus 2 [ Show all 14 ]
Probe	ABC152
Reference	Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Li JZ et al. (2003) Development and genetic mapping of 127 new microsatellite markers in barley Theoretical and Applied Genetics 107:1021-1027.
Data Source	Blake, Tom 05.04.19
Remark	Number of populations contributing to the placement of ABC152D in the Barley, Consensus 2006 DArT maps = 1 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Possible Orthologs	ABC152 [ Show all 14 ]
Probe for Locus	ABC152
Locus	ABC152B [ Show all 27 ]
Synonym	Synonym HAR35_41484 HAR35_43775 HAR35_47053
External Databases	DDBJ EMBL GenBank
General Remarks	Steptoe malt cDNA
Type	cDNA STS
PCR primers	TCC GCA AGT ACC AGA AGA GC GAC AAG GAA AGC CAA TCA AC
STS primers	5' AGTCGGCGCCGACCACCGGCGG 5' AGTCGGCGCCGACCACCGGCGG
STS size	ca. 300
Amplification Conditions	STS annealing temperature 58-60 oC
Sequence	AF309354 L43923 ABC152 ABC152-5 ABC152-3
Linkage Group	6S, Group 5, 2 2
Source Species	Hordeum vulgare
Source Germplasm	Steptoe (barley)
Source Tissue	malt
Insert Size	0.5