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GrainGenes Marker Report: ABC152B

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Locus
ABC152B
Type
RFLP
Synonym
SynonymABC152
Chromosome
1H
4H
Map
Barley-Consensus2-1H73.6
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Map Data
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Barley consensus 2
Barley genes
Barley, Abiotic QTL Consensus
Barley, Agronomic QTL Consensus
Barley, Consensus 2005, SNP
Barley, Consensus 2006, DArT
Barley, Consensus 2006, Marcel
Barley, GxHN, SFNB
Barley, Integrated, Marcel 2009
Barley, Steptoe x Morex, SNP
Barley, SxM
Barley, SxM, Feed QTLs
Probe
ABC152
Reference
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source
Blake, Tom05.04.19
Remark
Number of populations contributing to the placement of ABC152B in the Barley, Consensus 2006 DArT maps = 1
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Possible Orthologs
ABC152
[ Show all 14 ]



Probe for Locus
ABC152
Locus
ABC152B
[ Show all 27 ]
Synonym
SynonymHAR35_41484
HAR35_43775
HAR35_47053
External Databases
DDBJ
EMBL
GenBank
General Remarks
Steptoe malt cDNA
Type
cDNA
STS
PCR primers
TCC GCA AGT ACC AGA AGA GC
GAC AAG GAA AGC CAA TCA AC
STS primers
5' AGTCGGCGCCGACCACCGGCGG
5' AGTCGGCGCCGACCACCGGCGG
STS size
ca. 300
Amplification Conditions
STS annealing temperature 58-60 oC
Sequence
AF309354
L43923
ABC152
ABC152-5
ABC152-3
Linkage Group
6S, Group 5, 2
2
Source Species
Hordeum vulgare
Source Germplasm
Steptoe (barley)
Source Tissue
malt
Insert Size
0.5