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GrainGenes Locus Report: POPA2_0920

[Submit comment/correction][What is a locus?] A genetic locus is a specific position on a chromosome where a gene or genetic marker is located.

Locus	POPA2_0920  [ Marker Report ]
Type	SNP
Probe	HAR35_16241 i_11_20920
Synonym	Other name 11_20920 BOPA1_11_20920 BOPA1_5334-1533 Synonym 11_20920
Chromosome	3H
Chromosome Arm	3HL
Map	Hordeum-OPA-2009-3H 140.91 Hordeum-OPA123-2008-3H 140.91 Hordeum-OPAConsensus-2011-3H 148.79
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Sequence	HVVMRXALLhA0110M05
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0920 Marker name in barley OPA1 = 11_20920 Original SNP name = 5334-1533 Most representative HarvEST:Barley Assembly #32 Unigene = 5334 Most representative HarvEST:Barley Assembly #35 Unigene = 16241 HarvEST Unigene 35 Probe Set = rbah29m06_s_at Unigene 35 Rice Locus = LOC_Os01g70520 Description for best rice BLAST hit to Unigene 35 member = beta-glucosidase homolog precursor, putative, expressed; E value = 0 Marker name in barley Pilot OPA2 = 2_0920 Description for best rice BLAST hit to Unigene 35 member = protein beta-glucosidase homolog precursor, putative, expressed; E value = 0 BLAST hit in the rice genome = beta-glucosidase homolog precursor, putative, expressed

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